Stem-loop tcc-MIR166b

Accession

MI0017468

Description

Theobroma cacao tcc-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

aaaggagaaacgguugaugggaauguuguuuggcucgaggucaucuagguugaucuuuauuuccaugaaauuuucuuggauuaauuucauuuuuuuuuuccgggaaaguuucugcaauacauauagcccuauaugaucUCGGACCAGGCUUCAUUCCCgucaaccaaaacaacuuccu
..(((((....((((((((((((((..((((((.((((((((((.((((........((((..((.((((((((((((((..((..........))..)))))))))))))))).))))........)))).)))))))))).))))))..))))))))))))))........)))))

Structure

aa     ----aaac              uu      c          c    uugaucuu    uc  u              uu  uuuc 
  aggag        gguugaugggaaug  guuugg ucgaggucau uagg        uauu  ca gaaauuuucuugga  aa    a
  |||||        ||||||||||||||  |||||| |||||||||| ||||        ||||  || ||||||||||||||  ||     
  uccuu        ccaacugCCCUUAC  CGGACC GGCUcuagua aucc        auaa  gu cuuugaaagggccu  uu    u
--     caacaaaa              UU      A          u    cgauauac    -c  -              uu  uuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR166b

• Accession: MIMAT0020384
• Description: Theobroma cacao tcc-miR166b mature miRNA
• Sequence: 139 - UCGGACCAGGCUUCAUUCCC - 158
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108