Stem-loop tcc-MIR166c

Accession

MI0017469

Description

Theobroma cacao tcc-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

ugaagaagaaaagaggguguauggaaugaaguuugauccaagaucccuccuucuccauaaguucuuaucugauaauuacuuaagggauugaucauugaucUCGGACCAGGCUUCAUUCCUCacaccaugcuuuuccuugcu
.......((((((..(((((..(((((((((((((.(((.(((((..((..((.((.(((((..((((...))))..))))).))))..)).....))))).))).)))))))))))))..)))))...))))))......

Structure

ugaagaa      -ag     au             a   a     ---cc  cu  u  a     uc    c 
       gaaaag   ggugu  ggaaugaaguuug ucc agauc     uc  uc cc uaagu  uuau  
       ||||||   |||||  ||||||||||||| ||| |||||     ||  || || |||||  |||| u
       cuuuuc   ccaca  CCUUACUUCGGAC AGG Ucuag     ag  ag gg auuca  aaua  
-ucguuc      gua     CU             C   C     uuacu  uu  -  a     uu    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR166c

• Accession: MIMAT0020385
• Description: Theobroma cacao tcc-miR166c mature miRNA
• Sequence: 101 - UCGGACCAGGCUUCAUUCCUC - 121
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108