Stem-loop tcc-MIR169b

Accession

MI0017476

Description

Theobroma cacao tcc-MIR169b precursor miRNA

Sequence

ggaaaugaggcuaugugcugCAGCCAAGGAUGACUUGCCGGaaaagcuauauuuuacauuauauuacccuguucccugauauuaacuauaugcuucuguaucaauuuuaacuauaaauuaauaaaauuuauaauaaauguuauaagaguuuaucggcaagucgucucuggcuauaucacuguuucauuuucuc
(((((((((((...(((.((.(((((.((((((((((((((..(((((.......(((((................((((((...............))))))........((((((((.....))))))))...)))))......))))).)))))))))))))).))))).)).))).)))))))))))..

Structure

--           uau   c  C     A              aa     auauuuu     auauuacccuguucccugauauuaacuauaugcuucuguaucaauuuuaac        a 
  ggaaaugaggc   gug ug AGCCA GGAUGACUUGCCGG  aagcu       acauu                                                   uauaaauu a
  |||||||||||   ||| || ||||| ||||||||||||||  |||||       |||||                                                   |||||||| u
  cuuuuacuuug   cac au ucggu ucugcugaacggcu  uuuga       uguaa                                                   auauuuaa a
cu           --u   u  a     c              -a     -gaauau     ------------------------------------------------aua        a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169b

• Accession: MIMAT0020392
• Description: Theobroma cacao tcc-miR169b mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108