miRBase entry: tcc-MIR169c

Stem-loop tcc-MIR169c


Accession
MI0017477
Description
Theobroma cacao tcc-MIR169c precursor miRNA


Sequence


uaggccuagaaaggauggugCAGCCAAGGAUGACUUGCCGAcuacucccuccagccuuugcuguacuguuuuuuauauugaaaaaauggauauagaugaagugggcaagucgucuuuggcuacauuuuucuuucuccuccuc
.(((...((((((((.((((.((((((((((((((((((.(((.(((....((((....))))..(((((((((......))))))))).....)).).))).)))))))))))))))))).)))).))))))))...))).

Structure
u   ccu        u    C                  G   a -  ccuccagccuuugcugua         au 
 agg   agaaagga ggug AGCCAAGGAUGACUUGCC Acu c uc                  cuguuuuuu  a
 |||   |||||||| |||| |||||||||||||||||| ||| | ||                  |||||||||   
 ucc   ucuuucuu uuac ucgguuucugcugaacgg uga g ag                  gguaaaaaa  u
c   ucc        u    a                  g   a u  -------------auaua         gu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169c

Accession MIMAT0020393
Description Theobroma cacao tcc-miR169c mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGA - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108