Stem-loop tcc-MIR169d

Accession

MI0017478

Description

Theobroma cacao tcc-MIR169d precursor miRNA

Sequence

agauuaagagucuuguugggUAGCCAAGGAUGACUUGCCUAuauccaaaaaggauuuugaggaaagaaaagcugaaucugauaaaucucaucagaguccuuuuaaugguuucugggcagucuccuuuggcuauccugacuggcucuuaucuu
((((.(((((((..(((((((((((((((..((((.(((((...(((((((((((((((((((......((......))......)))..)))))))))))))..)))....)))))))))..)))))))))))).))).))))))))))).

Structure

-    u       uu   -            AU    U     -uau   --             --   aagaaa  cu 
 agau aagaguc  guu gggUAGCCAAGG  GACU GCCUA    cca  aaaaggauuuuga  gga      ag  g
 |||| |||||||  ||| ||||||||||||  |||| |||||    |||  |||||||||||||  |||      ||   
 ucua uucucgg  cag ccuaucgguuuc  cuga cgggu    ggu  uuuuccugagacu  ucu      uc  a
u    -       -u   u            cu    -     cuuu   aa             ac   aaauag  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169d

• Accession: MIMAT0020394
• Description: Theobroma cacao tcc-miR169d mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108