Stem-loop tcc-MIR169k

Accession

MI0017485

Description

Theobroma cacao tcc-MIR169k precursor miRNA

Sequence

aagagguagacaguguggugCAGCCAAGGAUGACUUGCCGGcuaaucccuaggaggcaugcauuugccuuguuucucugcuuuagauuauuccggcuaguuguccuuggcuacggugcgcugucuucuucuc
.(((((.((((((((((.((.((((((((((((((.(((((.(((((..(((((((((.((....))..)))))).))).....)))))..))))).)))))))))))))).)).)))))))))).))))).

Structure

a     u          g  C              U     -c     ---cc   -      -u  a 
 agagg agacagugug ug AGCCAAGGAUGACU GCCGG  uaauc     uag gaggca  gc u
 ||||| |||||||||| || |||||||||||||| |||||  |||||     ||| ||||||  ||  
 ucuuc ucugucgcgu gc ucgguuccuguuga cggcc  auuag     guc cuuugu  cg u
c     u          g  a              u     uu     auuuc   u      uc  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169k

• Accession: MIMAT0020401
• Description: Theobroma cacao tcc-miR169k mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108