Stem-loop tcc-MIR171c

Accession

MI0017491

Description

Theobroma cacao tcc-MIR171c precursor miRNA

Sequence

gggaagcaaaaagaaagcgauguuggugagguucaauccgaagacggauuuacgcaugcauucagucguaaaauacgaucucAGAUUGAGCCGCGCCAAUAUCacuuuccaaaaauauaugcc
............(((((.((((((((((.(((((((((.((.((((..((((((..((....))..))))))...)).)))).))))))))).)))))))))).)))))..............

Structure

--gggaagcaaaaa     c          a         c  a  -  -ga      ca  c 
              gaaag gauguuggug gguucaauc ga ga cg   uuuacg  ug a
              ||||| |||||||||| ||||||||| || || ||   ||||||  ||  
              cuuuc CUAUAACCGC CCGAGUUAG cu cu gc   aaaugc  ac u
ccguauauaaaaac     a          G         A  -  a  aua      ug  u 

Annotation confidence Low

Genome context

Unknown

Mature tcc-miR171c

• Accession: MIMAT0020407
• Description: Theobroma cacao tcc-miR171c mature miRNA
• Sequence: 83 - AGAUUGAGCCGCGCCAAUAUC - 103
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108