Stem-loop tcc-MIR171e

Accession

MI0017493

Description

Theobroma cacao tcc-MIR171e precursor miRNA

Sequence

uugguugcaauagucacuacgauguuggcucgguucacucagacaaaaucaacccuacgcuucucaagcacacacacacaaaaaaaagagcuuuagauuuugcguaucuuccauguguuuUGAUUGAGCCGUGCCAAUAUCcuagugccuuuucaauucac
..(((((.((.((.(((((.(((((((((.(((((((.(((((((..........(((((.(((.((((....................)))).)))....))))).........)).))))).))))))).))))))))).))))).)).)))))))...

Structure

-uu     c  u  u     c         u       c     -  aaaucaaccc     ---u   c    acacacaca 
   gguug aa ag cacua gauguuggc cgguuca ucaga ca          uacgc    ucu aagc         c
   ||||| || || ||||| ||||||||| ||||||| ||||| ||          |||||    ||| ||||          
   uuaac uu uc gugau CUAUAACCG GCCGAGU AGUuu gu          augcg    aga uucg         a
cac     -  u  c     c         U       U     u  -guaccuucu     uuuu   u    agaaaaaaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR171e

• Accession: MIMAT0020409
• Description: Theobroma cacao tcc-miR171e mature miRNA
• Sequence: 121 - UGAUUGAGCCGUGCCAAUAUC - 141
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108