Stem-loop tcc-MIR172a

Accession

MI0017497

Description

Theobroma cacao tcc-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

acagucacuguuugcugauggagcaucaucaagauucacaaaacuuuuuuuagggcuaaugaucaauggugaagaucaugcuucacuauacaaucagcccuuugaauauguaugGGAAUCUUGAUGAUGCUGCAgcggcaauaaauggcuaaau
..(((((.(..((((((.((.((((((((((((((((.((......(((..((((((...(((..(((((((((......)))))))))...)))))))))..)))......)).)))))))))))))))).)).))))))..).)))))....

Structure

--ac     c gu      a  g                a  aaacuu   uu      aau   -ca         au 
    aguca u  uugcug ug agcaucaucaagauuc ca      uuu  agggcu   gau   auggugaag  c
    ||||| |  |||||| || |||||||||||||||| ||      |||  ||||||   |||   |||||||||   
    ucggu a  aacggc AC UCGUAGUAGUUCUAAG gu      aag  ucccga   cua   uaucacuuc  a
uaaa     a au      g  G                G  auguau   uu      ---   aca         gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR172a

• Accession: MIMAT0020413
• Description: Theobroma cacao tcc-miR172a mature miRNA
• Sequence: 115 - GGAAUCUUGAUGAUGCUGCA - 134
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108