Stem-loop tcc-MIR172d

Accession

MI0017500

Description

Theobroma cacao tcc-MIR172d precursor miRNA

Sequence

ggagcagucguuguuugcaaauguggcaucaucaagauucacaugcaacguacauauauauuuauauauauuauaugguuuuggccugAGAAUCCUGAUGAUGCUGCAUuggcaaugaauggcuagaug
.....(((((((..((((.(((((((((((((((.(((((.((.((......(((((((((......))).))))))......)).)).))))).))))))))))))))).))))..))))))).....

Structure

ggagc       gu    a               a     a  u  aacgua      -   uu 
     agucguu  uugc aauguggcaucauca gauuc ca gc      cauaua uau  a
     |||||||  |||| ||||||||||||||| ||||| || ||      |||||| |||   
     ucgguaa  aacg uUACGUCGUAGUAGU CUAAG gu cg      guauau aua  u
guaga       gu    g               C     A  c  guuuug      u   ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR172d

• Accession: MIMAT0020416
• Description: Theobroma cacao tcc-miR172d mature miRNA
• Sequence: 89 - AGAAUCCUGAUGAUGCUGCAU - 109
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108