Stem-loop tcc-MIR390b

Accession

MI0017504

Description

Theobroma cacao tcc-MIR390b precursor miRNA

Sequence

aaaguaugggagaaucuguaAAGCUCAGGAGGGAUAGCGCCaucucgacgagguuguguuuuaaauguucaucagcuggcgcuaucuauccugaguuucauggguucuuccugcuaugug
..((((.((((((((((((.((((((((((.(((((((((((.((.((.((.(((........)))..)).)))).))))))))))).)))))))))).)))))))))))))))).....

Structure

---aa    u            a          G           u  c  c  -g   gug 
     agua gggagaaucugu AAGCUCAGGA GGAUAGCGCCa cu ga ga  guu   u
     |||| |||||||||||| |||||||||| ||||||||||| || || ||  |||    
     ucgu ccuucuugggua uuugaguccu ucuaucgcggu ga cu cu  uaa   u
gugua    -            c          a           c  -  a  ug   auu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR390b

• Accession: MIMAT0020420
• Description: Theobroma cacao tcc-miR390b mature miRNA
• Sequence: 21 - AAGCUCAGGAGGGAUAGCGCC - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108