Stem-loop tcc-MIR396a

Accession

MI0017511

Description

Theobroma cacao tcc-MIR396a precursor miRNA

Literature search

1 open access papers mention tcc-MIR396a
(2 sentences)

Sequence

ccgagguucucuuugugauuUUCCACAGCUUUCUUGAACUGugucgagaaaaucugcauucccaugcaaugguauacauacaacauucggcaccgggaaaacacaguucaugagagcuguggaaaauuacugagaggaucuucuuu
..(((((((((((.(((((((((((((((((((.((((((((((.((.....))....(((((.(((((((............))))..)))..))))).)))))))))).))))))))))))))))))).)))))))))))....

Structure

--cc           u                   U          cgagaaaaucugca     -a   --    guaua 
    gagguucucuu gugauuUUCCACAGCUUUC UGAACUGugu              uuccc  ugc  aaug     c
    ||||||||||| ||||||||||||||||||| ||||||||||              |||||  |||  ||||      
    uucuaggagag cauuaaaaggugucgagag acuugacaca              aaggg  acg  uuac     a
uuuc           u                   u          -------------a     cc   gc    aacau 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR396a-5p

• Accession: MIMAT0020427
• Description: Theobroma cacao tcc-miR396a-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108