Stem-loop tcc-MIR398a

Accession

MI0017517

Description

Theobroma cacao tcc-MIR398a precursor miRNA

Literature search

1 open access papers mention tcc-MIR398a
(1 sentences)

Sequence

uuaaugguggaggagcccaacaggagcgacaugagaacacauguggccacucuugaaggacaaaccuuauccuguguguuuugaUGUGUUCUCAGGUCGCCCCUGcagggcuuuccuucaccuuc
.....(((((((((((((..((((.(((((.(((((((((((..((((((.....((((.....)))).....))).)))...))))))))))).))))).))))..))))..)))))))))...

Structure

uuaau         --    aa    a     a           -gu   -   ucuug    a 
     gguggagga  gccc  cagg gcgac ugagaacacau   ggc cac     aagg c
     |||||||||  ||||  |||| ||||| |||||||||||   ||| |||     |||| a
     ccacuuccu  cggg  GUCC CGCUG ACUCUUGUGUa   uug gug     uucc a
--cuu         uu    ac    C     G           guu   u   uccua    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR398a

• Accession: MIMAT0020433
• Description: Theobroma cacao tcc-miR398a mature miRNA
• Sequence: 85 - UGUGUUCUCAGGUCGCCCCUG - 105
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108