Stem-loop tcc-MIR398b

Accession

MI0017518

Description

Theobroma cacao tcc-MIR398b precursor miRNA

Literature search

1 open access papers mention tcc-MIR398b
(1 sentences)

Sequence

cagccagaugguuuaccacgaaggggugccaccuaagaacccaggcgguuuggccugagcuaggccuuugccaagcugcuaugaaaaggaaggcugaaugcuaaugcagccagcagcaaccgguUGUGUUCUCAGGUCACCCCUUcgcgguacuucuaucuucgc
..((.((((((..((((.((((((((((..((((.(((((.(((.(((((.((((((...))))))........((((((...........(((((.((....)).)))))))))))))))).))).))))).)))))))))))))).))))...))))))..))

Structure

ca  -c      -uu    a          cc    a     c   g     uggccugagcuaggccuuugccaa      augaaaaggaa     a  g 
  gc  agaugg   uacc cgaaggggug  accu agaac cag cgguu                        gcugcu           ggcug au c
  ||  ||||||   |||| ||||||||||  |||| ||||| ||| |||||                        ||||||           ||||| ||  
  cg  ucuauc   augg gcUUCCCCAC  UGGA UCUUG GUu gccaa                        cgacga           ccgac ua u
--  cu      uuc    c          --    C     U   g     ------------------------      -----------     g  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR398b

• Accession: MIMAT0020434
• Description: Theobroma cacao tcc-miR398b mature miRNA
• Sequence: 125 - UGUGUUCUCAGGUCACCCCUU - 145
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108