Stem-loop tcc-MIR399d

Accession

MI0017522

Description

Theobroma cacao tcc-MIR399d precursor miRNA

Sequence

ucucuggugcaguugcauuacagggcaaagaucuccauuggcaggcugccacuuugggucacgaaccgaauuauguguuccuauagugugucuucUGCCAAAGGAGAUUUGCCCGGcaauucuuccgcauugauau
.....(((((.(..(.(((.(.(((((..(((((((.((((((((..((((((.((((.(((............)))..)))).)))).))..)))))))).)))))))))))).).))).)..).))))).....

Structure

ucucu     a uu c   a a     aa       a        cu  -    u    -u   gaacc 
     ggugc g  g auu c gggca  gaucucc uuggcagg  gc cacu uggg  cac     g
     ||||| |  | ||| | |||||  ||||||| ||||||||  || |||| ||||  |||      
     uuacg c  c uaa G CCCGU  UUAGAGG AACCGUcu  ug guga aucc  gug     a
uauag     c uu u   c G     --       A        uc  u    u    uu   uauua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399d

• Accession: MIMAT0020438
• Description: Theobroma cacao tcc-miR399d mature miRNA
• Sequence: 96 - UGCCAAAGGAGAUUUGCCCGG - 116
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108