Stem-loop tcc-MIR399e

Accession

MI0017523

Description

Theobroma cacao tcc-MIR399e precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

aaggguagagaagaauaacagcgcaauucuccuuuggcagaaaauguugcacuuguagaaaaagugcuauauuaucCGCCAAAGGAGAAUUGCCCUGccauucaacuacucuacauc
.(((((((....((((..(((.((((((((((((((((.((.(((((.((((((.......)))))).))))).)).)))))))))))))))).)))..))))..))))))).....

Structure

----a       agaa    aa   c                a  a     u      gu 
     aggguag    gaau  cag gcaauucuccuuuggc ga aaugu gcacuu  a
     |||||||    ||||  ||| |||||||||||||||| || ||||| ||||||  g
     ucucauc    cuua  GUC CGUUAAGAGGAAACCG cu uuaua cgugaa  a
cuaca       --aa    cc   C                C  a     u      aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399e

• Accession: MIMAT0020439
• Description: Theobroma cacao tcc-miR399e mature miRNA
• Sequence: 77 - CGCCAAAGGAGAAUUGCCCUG - 97
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108