Stem-loop tcc-MIR535

Accession

MI0017532

Description

Theobroma cacao tcc-MIR535 precursor miRNA

Sequence

acagcuuuguacauaucauaUGACAACGAUAGAGAGCACGCuuguacacauccauguccuugcaagaaugccaacgagcgugcucucucucguugucaauugauaaugugucaaaucuca
..((.(((((((((((((..(((((((((.(((((((((((((((...(((.(.(((....))).).)))...))))))))))))))).)))))))))..)))).))))).)))).))..

Structure

ac  c    -     -    ua         U               aca   c a   c 
  ag uuug uacau auca  UGACAACGA AGAGAGCACGCuugu   cau c ugu c
  || |||| ||||| ||||  ||||||||| |||||||||||||||   ||| | |||  
  uc aaac gugua uagu  acuguugcu ucucucgugcgagca   gua g acg u
ac  u    u     a    ua         c               acc   a a   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR535

• Accession: MIMAT0020448
• Description: Theobroma cacao tcc-miR535 mature miRNA
• Sequence: 21 - UGACAACGAUAGAGAGCACGC - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108