Stem-loop tcc-MIR827

Accession

MI0017533

Description

Theobroma cacao tcc-MIR827 precursor miRNA

Sequence

aaauuaugcauuauugaauauguuuguugauggucaucuugucauuuuuucaccucuucuuggccuuguaccaguugccaguaccaaguucgugugcagaaugaugcUUAGAUGACCAUCAACAAACAcuuucaucguuuugcauucu
.....(((((..((((((..((((((((((((((((((((((((((((..(((.....(((((.((.(((.....))).))..))))).....))).)))))))))...)))))))))))))))))))..))))..))..)))))...

Structure

aaauu     uu  --    ua                   ---         uu   cucuu     -c  u   c 
     augca  au  ugaa  uguuuguugauggucaucu   ugucauuuu  cac     cuugg  cu gua c
     |||||  ||  ||||  |||||||||||||||||||   |||||||||  |||     |||||  || ||| a
     uacgu  ug  acuu  ACAAACAACUACCAGUAGA   guaguaaga  gug     gaacc  ga cgu g
--ucu     uu  cu    uc                   UUc         -c   ugcuu     au  c   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR827

• Accession: MIMAT0020449
• Description: Theobroma cacao tcc-miR827 mature miRNA
• Sequence: 108 - UUAGAUGACCAUCAACAAACA - 128
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108