Stem-loop cel-mir-4812

Accession

MI0017542

Description

Caenorhabditis elegans cel-mir-4812 precursor miRNA mir-1829

Gene
family

RF00955; mir-1829

Literature search

1 open access papers mention cel-mir-4812
(2 sentences)

Sequence

1047 reads, 8.0 reads per million, 75 experiments

agaaguAAGAGCGCUUGUAGUGAGUUGUCAaaaauugaguaugaCAACCACUGCAAUUUCUCUAUUAcauuuuugg
....(((((((...((((((((.(((((((...........)))))))))))))))...))))..)))........

Structure

----agaa   --    CGC        A       aaaa 
        guA  AGAG   UUGUAGUG GUUGUCA    u
        |||  ||||   |||||||| |||||||    u
        cAU  UCUC   AACGUCAC CAACagu    g
gguuuuua   UA    UUU        -       auga 

Annotation confidence High

Genome context

chrX: 15242774-15242849 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-4812

Mature cel-miR-4812-5p

• Accession: MIMAT0019998
• Description: Caenorhabditis elegans cel-miR-4812-5p mature miRNA
• Sequence: 7 - AAGAGCGCUUGUAGUGAGUUGUCA - 30
• Evidence: experimental ; Illumina [1]

Mature cel-miR-4812-3p

• Accession: MIMAT0019999
• Description: Caenorhabditis elegans cel-miR-4812-3p mature miRNA
• Sequence: 45 - CAACCACUGCAAUUUCUCUAUUA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21085120
   Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
   "Jan CH, Friedman RC, Ruby JG, Bartel DP"
   "Nature (2011) 469:97-101