Stem-loop dme-mir-4915

Accession

MI0017697

Description

Drosophila melanogaster dme-mir-4915 precursor miRNA

Sequence

6 reads, 1 reads per million, 6 experiments

GUGAGAAAAAGUAGUAAAUUAAGCAuaucacgcaaggacaaacauuaaguuaaggccuaguuccuauuauacuaggaauacucaauccuacuuaugccucuuauucuucuuuucucag
.((((((((((.(((((.....(((((.......((((......((.(((.....((((((.........))))))...))).))))))...)))))...)))))))..)))))))).

Structure

G        --  U     AUUAA     ucacgca    caaaca  a   uaagg      ucc 
 UGAGAAAA  AG AGUAA     GCAua       agga      uu agu     ccuagu   u
 ||||||||  || |||||     |||||       ||||      || |||     ||||||   a
 acucuuuu  uc uuauu     cguau       uccu      aa uca     ggauca   u
g        cu  -     --cuc     ----uca    ------  c   --uaa      uau 

Annotation confidence Not enough data

Genome context

chrX: 133385-133502 [+]

Mature dme-miR-4915-5p

• Accession: MIMAT0020508
• Description: Drosophila melanogaster dme-miR-4915-5p mature miRNA
• Sequence: 1 - GUGAGAAAAAGUAGUAAAUUAAGCA - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177960
   Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
   "Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
   "Genome Res (2011) 21:286-300