Stem-loop dme-mir-2535b

Accession

MI0017699

Description

Drosophila melanogaster dme-mir-2535b precursor miRNA

Sequence

4986 reads, 42.0 reads per million, 45 experiments

GUAAGUGACUAUGCCGGGAUUGUGGuuauugaacuuagcgucuccACUCACGGCAUUUCAUUCACUUGcag
((((((((..((((((.((..((((..................)))))).)))))).....))))))))..

Structure

--        ---CU      G  UU    uuauugaa 
  GUAAGUGA     AUGCCG GA  GUGG        c
  ||||||||     |||||| ||  ||||         
  cGUUCACU     UACGGC CU  CAcc        u
ga        UACUU      A  --    ucugcgau 

Annotation confidence Medium

Genome context

chrX: 21298275-21298345 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-2535b

Mature dme-miR-2535b-5p

• Accession: MIMAT0053354
• Description: Drosophila melanogaster dme-miR-2535b-5p mature miRNA
• Sequence: 1 - GUAAGUGACUAUGCCGGGAUUGUGG - 25
• Evidence: experimental ; Illumina [1]

Mature dme-miR-2535b-3p

• Accession: MIMAT0020510
• Description: Drosophila melanogaster dme-miR-2535b-3p mature miRNA
• Sequence: 46 - ACUCACGGCAUUUCAUUCACUUG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177960
   Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
   "Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
   "Genome Res (2011) 21:286-300