miRBase entry: cel-mir-4921

Stem-loop cel-mir-4921

Accession

MI0017706

Description

Caenorhabditis elegans cel-mir-4921 precursor miRNA

Sequence

guaaguugaugaguucacacauaaauuuuggauauauaUGUGCCACUCACUUUCUUGCAG
(((((....(((((...((((((.((.......)).))))))..)))))....)))))..

Structure

--     uuga     uca      a  uu 
  guaag    ugagu   cacaua au  u
  |||||    |||||   |||||| ||  g
  CGUUC    ACUCA   GUGUau ua  g
GA     UUUC     -CC      a  ua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chrX: 1879979-1880038 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from cel-mir-4921

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cel-miR-4921

Accession	MIMAT0020127
Description	Caenorhabditis elegans cel-miR-4921 mature miRNA
Sequence	39 - UGUGCCACUCACUUUCUUGCAG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 21177960
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
"Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
"Genome Res (2011) 21:286-300