miRBase entry: dme-mir-4939

Stem-loop dme-mir-4939


Accession
MI0017725
Description
Drosophila melanogaster dme-mir-4939 precursor miRNA


Sequence

2 reads, 1 reads per million, 2 experiments
gcaucaugcuucugcgaucucuaccaauuuuccuugcacucuuuguccuuuccaaaagugacACGGGUGCAGGUGAAGAUUCGgaagaggacgacgaaaacgacugcaa
(((((....(((..((.(((((.((((((((((((((((((..((((((((...)))).)))).))))))))).))))))).)).))))).))..)))...)).)))..

Structure
--   -  augc   ug  a     a  -       -         uu    -    c 
  gca uc    uuc  cg ucucu cc aauuuuc cuugcacuc  uguc cuuu  
  ||| ||    |||  || ||||| || ||||||| |||||||||  |||| |||| c
  cgu ag    aag  gc ggaga gG UUAGAAG GGACGUGGG  Acag gaaa  
aa   c  -caa   ca  a     a  C       U         -C    u    a 


Annotation confidence Not enough data
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Genome context
chr2R: 22985211-22985319 [-]

Database links

Mature dme-miR-4939-3p

Accession MIMAT0020145
Description Drosophila melanogaster dme-miR-4939-3p mature miRNA
Sequence 63 - ACGGGUGCAGGUGAAGAUUCG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215