Stem-loop dme-mir-4941

Accession

MI0017727

Description

Drosophila melanogaster dme-mir-4941 precursor miRNA

Literature search

1 open access papers mention dme-mir-4941
(1 sentences)

Sequence

9 reads, 4 reads per million, 4 experiments

augaccggcgaggagaugcgauuCCUCGAGCUGCUCACCGCCUUuggcuuggacaucgaGGCGGUGGCCGCCGCUCUGGGAGUcgauaugcacacgcucaaca
......((((.(...(((((((((((.((((.((((((((((((((.......))..))))))))))..)).)))).)))))))).)))...).)))).....

Structure

augacc    a gag   -        C    U  --          --  gc 
      ggcg g   aug cgauuCCU GAGC GC  UCACCGCCUU  ug  u
      |||| |   ||| |||||||| |||| ||  ||||||||||  ||  u
      ucgc c   uau gcUGAGGG CUCG CG  GGUGGCGGag  ac  g
-acaac    a acg   a        U    C  CC          cu  ag 

Annotation confidence Not enough data

Genome context

chr3L: 16031189-16031291 [+]

Mature dme-miR-4941-5p

• Accession: MIMAT0020148
• Description: Drosophila melanogaster dme-miR-4941-5p mature miRNA
• Sequence: 24 - CCUCGAGCUGCUCACCGCCUU - 44
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4941-3p

• Accession: MIMAT0020149
• Description: Drosophila melanogaster dme-miR-4941-3p mature miRNA
• Sequence: 60 - GGCGGUGGCCGCCGCUCUGGGAGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215