Stem-loop dme-mir-4948

Accession

MI0017734

Description

Drosophila melanogaster dme-mir-4948 precursor miRNA

Sequence

23 reads, 5 reads per million, 7 experiments

gucguagaugugggcguagguggCGGCGGGCGUGGCGUGCGUGAUccugguuguggugaCCACGCCGGUGCGCUUGCCCUCcuucugggcccacuccaugacgcuc
(((((.((.((((((.((((.((.((((((((((.((.(((((.(((((....))).)).))))))).))))))))))..)).)))).)))))))).)))))....

Structure

----     a  u      g    u  -C          G  U     A  -   g 
    gucgu ga gugggc uagg gg  GGCGGGCGUG CG GCGUG Uc cug u
    ||||| || |||||| |||| ||  |||||||||| || ||||| || |||  
    cagua cu cacccg gucu cC  CCGUUCGCGU GC CGCAC ag ggu u
cucg     c  -      g    u  UC          G  -     C  u   g 

Annotation confidence Not enough data

Genome context

chr3R: 31051098-31051203 [-]

Mature dme-miR-4948-5p

• Accession: MIMAT0020158
• Description: Drosophila melanogaster dme-miR-4948-5p mature miRNA
• Sequence: 24 - CGGCGGGCGUGGCGUGCGUGAU - 45
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4948-3p

• Accession: MIMAT0020159
• Description: Drosophila melanogaster dme-miR-4948-3p mature miRNA
• Sequence: 60 - CCACGCCGGUGCGCUUGCCCUC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215