Stem-loop dme-mir-4955

Accession

MI0017741

Description

Drosophila melanogaster dme-mir-4955 precursor miRNA

Sequence

96 reads, 10 reads per million, 23 experiments

caccgauuugcuuccccuuuuuccgugCGCGGAGAAAAAAAUCCCCAGAaacauaauaucaggaugcucucuaucucugucucugucuaacgcuuaauuguugcucaauugcgaauuaaugucUGGGGCUUUUUUUCUCCGUGCAgugccauagccguaaccacaaccu
.........................((((((((((((((((.(((((((....((((..(((((((.....)))).)))...........(((..(((((.....)))))))).))))...))))))).))))))))))))))))........................

Structure

caccgauuugcuuccccuuuuuccg                U       aaca    aucaggaugcucucuaucucugucucugucuaa   uu     u 
                         ugCGCGGAGAAAAAAA CCCCAGA    uaau                                 cgc  aauug u
                         |||||||||||||||| |||||||    ||||                                 |||  ||||| g
                         ACGUGCCUCUUUUUUU GGGGUcu    auua                                 gcg  uuaac c
-uccaacaccaaugccgauaccgug                C       -gua    --------------------------------a   --     u 

Annotation confidence Not enough data

Genome context

chrX: 2544740-2544908 [-]

Mature dme-miR-4955-5p

• Accession: MIMAT0020171
• Description: Drosophila melanogaster dme-miR-4955-5p mature miRNA
• Sequence: 28 - CGCGGAGAAAAAAAUCCCCAGA - 49
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4955-3p

• Accession: MIMAT0020172
• Description: Drosophila melanogaster dme-miR-4955-3p mature miRNA
• Sequence: 124 - UGGGGCUUUUUUUCUCCGUGCA - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215