Stem-loop dme-mir-4960

Accession

MI0017746

Description

Drosophila melanogaster dme-mir-4960 precursor miRNA

Sequence

81 reads, 2 reads per million, 26 experiments

acacaaggccugccgcccaagaaacgcaagcccagaaguccggcagucgagaaucacgagggaCUGGGACCUUGGGCUUACGGUucucaguuuggcuugac
.....(((((....((...(((..((.((((((((..((((..(((((.............))))))))).)))))))).))..)))..))..)))))...

Structure

acaca     ugcc  cca   aa  c        aa    gg     gagaa 
     aggcc    gc   aga  cg aagcccag  gucc  caguc     u
     |||||    ||   |||  || ||||||||  ||||  |||||     c
     uucgg    ug   ucu  GC UUCGGGUU  CAGG  GUCag     a
--cag     --uu  -ac   UG  A        -C    --     ggagc 

Annotation confidence Not enough data

Genome context

chrX: 569903-570003 [+]

Mature dme-miR-4960-3p

• Accession: MIMAT0020180
• Description: Drosophila melanogaster dme-miR-4960-3p mature miRNA
• Sequence: 64 - CUGGGACCUUGGGCUUACGGU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215