Stem-loop dme-mir-4969

Accession

MI0017755

Description

Drosophila melanogaster dme-mir-4969 precursor miRNA

Sequence

585 reads, 15 reads per million, 43 experiments

guauggauuuuucggcguggCGGUAAAUUGAAUGAUGAGUGGGAggaugucgcugccauuguuugguugauaagggagccuggcgcacuauuaccuggcucucugaaacgagagcCCACCUGUCAAUCAAUACCACCccgccgaugcgacaucaucau
(.(((......((((((.((.((((..((((.(((((.(((((....(((((..((((.....)))))))))((((((((.((..........)).))))))))..........))))).))))).)))))))).)).)))))).....)))).....

Structure

----- u   gauuuu      u  C    AA    A     A     Aggaugucgcugccauuguuugguugaua        u  cgca 
     g aug      ucggcg gg GGUA  UUGA UGAUG GUGGG                             agggagcc gg    c
     | |||      |||||| || ||||  |||| ||||| |||||                             |||||||| ||     
     c uac      agccgc CC CCAU  AACU ACUGU CACCc                             ucucucgg cc    u
uacua -   -agcgu      c  A    --    A     C     -------------------gagagcaaag        u  auua 

Annotation confidence Not enough data

Genome context

chr3R: 21798514-21798671 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-4969

Mature dme-miR-4969-5p

• Accession: MIMAT0020195
• Description: Drosophila melanogaster dme-miR-4969-5p mature miRNA
• Sequence: 21 - CGGUAAAUUGAAUGAUGAGUGGGA - 44
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4969-3p

• Accession: MIMAT0020196
• Description: Drosophila melanogaster dme-miR-4969-3p mature miRNA
• Sequence: 116 - CCACCUGUCAAUCAAUACCACC - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215