miRBase entry: dme-mir-4970

Stem-loop dme-mir-4970


Accession
MI0017756
Description
Drosophila melanogaster dme-mir-4970 precursor miRNA


Sequence

10 reads, 2 reads per million, 10 experiments
ccaaaggugggcgacaagggCUGGGAGCAGCAGUUGCUGGCGguauucugaagcugcucuuccguggguugcucuugcuccugacccuccucuuccuccgcuu
.....((.(((.((..((((.(((((((((.(((.(((.((((..................)))).))).))).))))))))).))))..)).))).))....

Structure
ccaaa  u   c  ca    C         C   U   G    uauucuga 
     gg ggg ga  aggg UGGGAGCAG AGU GCU GCGg        a
     || ||| ||  |||| ||||||||| ||| ||| ||||         
     cc ccu cu  uccc guccucguu ucg ugg ugcc        g
-uucg  u   u  cc    a         c   u   g    uucucguc 


Annotation confidence Not enough data
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Genome context
chr2L: 10741885-10741987 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-4970
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-4970-5p

Accession MIMAT0020197
Description Drosophila melanogaster dme-miR-4970-5p mature miRNA
Sequence 21 - CUGGGAGCAGCAGUUGCUGGCG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215