Stem-loop dme-mir-4972

Accession

MI0017758

Description

Drosophila melanogaster dme-mir-4972 precursor miRNA

Literature search

1 open access papers mention dme-mir-4972
(1 sentences)

Sequence

40 reads, 8 reads per million, 24 experiments

aaucaaaagcgccguaggccuccaCCUCGGCUUUACAGAUAUAUAUauauauaucguguaUAUAUCUGUGCGAUCGGGAUUGagacugagguugguccgaguacuuu
.....((((.((((..((((...(((((((((((((((((((((((((.......)))))))))))))))...........))).))))))).)))))).)).))))

Structure

aauca    c  -  ua    ucc       -   -----------               au 
     aaag gc cg  ggcc   aCCUCGG CUU           UACAGAUAUAUAUau  a
     |||| || ||  ||||   ||||||| |||           |||||||||||||||  u
     uuuc ug gc  cugg   uggaguc gaG           GUGUCUAUAUaugug  a
-----    a  a  --    --u       a   UUAGGGCUAGC               cu 

Annotation confidence Not enough data

Genome context

chr2L: 3636967-3637073 [-]

Mature dme-miR-4972-5p

• Accession: MIMAT0020199
• Description: Drosophila melanogaster dme-miR-4972-5p mature miRNA
• Sequence: 25 - CCUCGGCUUUACAGAUAUAUAU - 46
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4972-3p

• Accession: MIMAT0020200
• Description: Drosophila melanogaster dme-miR-4972-3p mature miRNA
• Sequence: 61 - UAUAUCUGUGCGAUCGGGAUUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215