Stem-loop dme-mir-4980

Accession

MI0017766

Description

Drosophila melanogaster dme-mir-4980 precursor miRNA

Sequence

12 reads, 1 reads per million, 7 experiments

gaagaggcugagagcgggaaagugagaaguagagagcgcagauagggagugggagcuuauaccguuauaaaGCCAACUUCCGUUCUGCGUUUCGuuccaaccccccaccucucuuucccucu
..(((((..(((((.(((....((.(((.....(((((((((..((((((..(.(((((((....))).))))).))))))..)))))))))..)))))....)))..)))))....)))))

Structure

ga     --cu     -c   aaag  a   guaga         ua      gg a    -   c 
  agagg    gagag  ggg    ug gaa     gagcgcaga  gggagu  g gcuu aua c
  |||||    |||||  |||    || |||     |||||||||  ||||||  | |||| |||  
  ucucc    cucuc  ccc    ac cuu     UUUGCGUCU  CCUUCA  C CGaa uau g
--     cuuu     ca   ccca  -   ---GC         UG      -A -    a   u 

Annotation confidence Not enough data

Genome context

chr2R: 7786322-7786443 [+]

Mature dme-miR-4980-3p

• Accession: MIMAT0020213
• Description: Drosophila melanogaster dme-miR-4980-3p mature miRNA
• Sequence: 72 - GCCAACUUCCGUUCUGCGUUUCG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215