miRBase entry: egr-mir-1

Stem-loop egr-mir-1


Accession
MI0017775
Description
Echinococcus granulosus egr-mir-1 precursor miRNA

Literature search
1 open access papers mention egr-mir-1
(5 sentences)

Sequence

gcuucccaauaggccauagaguaagucccuacaccuauggggaucuaUGGAAUGUUGUGAAGUAUGU
(((((.(((((..(((((((.....((((((......)))))))))))))..))))).)))))....

Structure
----     c     gg       guaag      ca 
    gcuuc caaua  ccauaga     ucccua  c
    ||||| |||||  |||||||     ||||||   
    UGAAG GUUGU  GGUaucu     aggggu  c
UGUA     U     AA       -----      au 


Annotation confidence Not enough data
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Genome context
APAU02000107.1: 117513-117579 [+]

Database links

Mature egr-miR-1-5p

Accession MIMAT0020228
Description Echinococcus granulosus egr-miR-1-5p mature miRNA
Sequence 48 - UGGAAUGUUGUGAAGUAUGU - 67
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83