Stem-loop egr-mir-9

Accession

MI0017781

Description

Echinococcus granulosus egr-mir-9 precursor miRNA

Literature search

1 open access papers mention egr-mir-9
(6 sentences)

Sequence

uaguugccauUCUUUGGUUAUCUAGCUGUGUGagguuuagcuucagucagcucuuauuuucaCAAGGCUAGAUUUCCAAACAAAcgcaccuaa
(((.(((..((.(((((..((((((((.(((((((...((((......)))).....))))))).))))))))..))))).))..))).))).

Structure

-   u   ca  C     UU        G       --uuu    uc 
 uag ugc  uU UUUGG  AUCUAGCU UGUGagg     agcu  a
 ||| |||  || |||||  |||||||| |||||||     ||||   
 auc acg  AA AAACC  UAGAUCGG ACacuuu     ucga  g
a   c   cA  C     UU        A       uauuc    cu 

Annotation confidence Not enough data

Genome context

APAU02000235.1: 50908-51000 [+]

Mature egr-miR-9-5p

• Accession: MIMAT0020235
• Description: Echinococcus granulosus egr-miR-9-5p mature miRNA
• Sequence: 11 - UCUUUGGUUAUCUAGCUGUGUG - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-9-3p

• Accession: MIMAT0037423
• Description: Echinococcus granulosus egr-miR-9-3p mature miRNA
• Sequence: 63 - CAAGGCUAGAUUUCCAAACAAA - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83