Stem-loop egr-mir-153

Accession

MI0017788

Description

Echinococcus granulosus egr-mir-153 precursor miRNA

Literature search

4 open access papers mention egr-mir-153
(6 sentences)

Sequence

4372 reads, 233.0 reads per million, 12 experiments

agucguaaAUGCUUACGAGACGUGCACUccaguuggaaugguugucaacuaccuuguggaUUGCAUAGUCUCAUAAGUGCCAUcgacu
(((((.....(((((.((((((((((.((((...((..(((((...)))))))...)))).))))).))))).))))).....)))))

Structure

     uaaAU     C     -     C    guu  aa     g 
agucg     GCUUA GAGAC GUGCA Ucca   gg  ugguu  
|||||     ||||| ||||| ||||| ||||   ||  ||||| u
ucagc     UGAAU CUCUG UACGU aggu   cc  aucaa  
     UACCG     A     A     U    guu  --     c 

Annotation confidence High

Genome context

APAU02000047.1: 276191-276278 [-]

Mature egr-miR-153-5p

• Accession: MIMAT0037428
• Description: Echinococcus granulosus egr-miR-153-5p mature miRNA
• Sequence: 9 - AUGCUUACGAGACGUGCACU - 28
• Evidence: experimental ; Illumina [2]

Mature egr-miR-153-3p

• Accession: MIMAT0020244
• Description: Echinococcus granulosus egr-miR-153-3p mature miRNA
• Sequence: 61 - UUGCAUAGUCUCAUAAGUGCCAU - 83
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83