Stem-loop egr-mir-4990

Accession

MI0017795

Description

Echinococcus granulosus egr-mir-4990 precursor miRNA

Literature search

1 open access papers mention egr-mir-4990
(2 sentences)

Sequence

4158 reads, 250.0 reads per million, 13 experiments

gUCUCCUCACGGGUUUAAACCCAAUUcggaguauuucuccacaaguguccaaugauggGUUUGACUCGGUGGAGGC
((((((.(.((((((.((((((((((.(((.(((((......)))))))))))..)))))))))))))).))))))

Structure

      U A      U       --   c   g     cu 
gUCUCC C CGGGUU AAACCCA  AUU gga uauuu  c
|||||| | |||||| |||||||  ||| ||| |||||   
CGGAGG G GCUCAG UUUGggu  uaa ccu gugaa  c
      U -      -       ag   -   -     ca 

Annotation confidence High

Genome context

APAU02000033.1: 147572-147647 [-]

Mature egr-miR-4990-5p

• Accession: MIMAT0020251
• Description: Echinococcus granulosus egr-miR-4990-5p mature miRNA
• Sequence: 2 - UCUCCUCACGGGUUUAAACCCAAUU - 26
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-4990-3p

• Accession: MIMAT0057837
• Description: Echinococcus granulosus egr-miR-4990-3p mature miRNA
• Sequence: 59 - GUUUGACUCGGUGGAGGC - 76
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83