Stem-loop emu-mir-2c

Accession

MI0017801

Description

Echinococcus multilocularis emu-mir-2c precursor miRNA

Sequence

gggcguuguucgUCGUCAACAUUGCCUGUAGAcacggguugcgaugUCACAGCCAAUAUUGAUGAAcgaguggcgucu
(((((((((((((((((((.((((.((((.((((((.....)).)))))))).)))).)))))).)))))))))))))

Structure

             -      C    C    A    -  g 
gggcguuguucgU CGUCAA AUUG CUGU GAca cg g
||||||||||||| |||||| |||| |||| |||| || u
ucugcggugagcA GUAGUU UAAC GACA CUgu gc u
             A      A    C    -    a  g 

Annotation confidence Not enough data

Genome context

scaffold_007728: 10027399-10027476 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from emu-mir-2c

Mature emu-miR-2c-3p

• Accession: MIMAT0020257
• Description: Echinococcus multilocularis emu-miR-2c-3p mature miRNA
• Sequence: 47 - UCACAGCCAAUAUUGAUGAA - 66
• Evidence: experimental ; Illumina [2]

Mature emu-miR-2c-5p

• Accession: MIMAT0037437
• Description: Echinococcus multilocularis emu-miR-2c-5p mature miRNA
• Sequence: 13 - UCGUCAACAUUGCCUGUAGA - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267