Stem-loop gma-MIR319d

Accession

MI0017842

Description

Glycine max gma-MIR319d precursor miRNA

Literature search

18 open access papers mention gma-MIR319d
(44 sentences)

Sequence

7018705 reads, 17212.0 reads per million, 176 experiments

agagugaaggagcuuccuuuagcccacacaugguuaggggauuaaaggguugcugaaguAUCUGCUGACUCAUUCAUACacauagaauagugauucaaauugcuaagguaauugugugaaugaagcaggggacauuuugcauccuucuuucuaugugcuUGGACUGAAGGGGAGCUCCUUCuuucuguug
((((.(((((((((((((((((.((((((((((..(((.......(((((.((.(((((.(((.(((..(((((((((((..((...(((((((....)))))))...))..)))))))))))..))).))).)))))))))))))))..)))))))..))).))))).)))))))))))).))))....

Structure

----    u            -     c   --       uu   ggauuaa     u  u     A   G   AC           ca  gaa       u 
    agag gaaggagcuucc uuuag cca  cacaugg  agg       agggu gc gaagu UCU CUG  UCAUUCAUACa  ua   uagugau c
    |||| |||||||||||| ||||| |||  |||||||  |||       ||||| || ||||| ||| |||  |||||||||||  ||   |||||||  
    ucuu CUUCCUCGAGGG AAGUC GGU  guguauc  ucu       uccua cg uuuua agg gac  aguaagugugu  au   aucguua a
guug    u            G     A   uc       uu   -------     -  -     c   g   ga           ua  gga       a 

Annotation confidence Low

Genome context

chr15: 40974346-40974535 [-]

Mature gma-miR319d-5p

• Accession: MIMAT0061471
• Description: Glycine max gma-miR319d-5p mature miRNA
• Sequence: 60 - AUCUGCUGACUCAUUCAUAC - 79
• Evidence: experimental ; unknown

Mature gma-miR5031-5p

• Accession: MIMAT0021050
• Description: Glycine max gma-miR5031-5p mature miRNA
• Sequence: 60 - AUCUGCUGACUCAUUCAUAC - 79
• Evidence: experimental ; SOLiD [1]

Mature gma-miR319d-3p

• Accession: MIMAT0020992
• Description: Glycine max gma-miR319d-3p mature miRNA
• Sequence: 160 - UGGACUGAAGGGGAGCUCCUUC - 181
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506