Stem-loop gma-MIR394c

Accession

MI0017846

Description

Glycine max gma-MIR394c precursor miRNA

Literature search

9 open access papers mention gma-MIR394c
(13 sentences)

Sequence

166513 reads, 395.0 reads per million, 178 experiments

cagaguuucUUGGCAUUCUGUCCACCUCCacuuccacuuucaguuccauggaucucucucucuuuuuggcccuaucuacguacucggAGGUGGACAUACUGCCAAUAGag
.........((((((...(((((((((((............((..(((.(((........)))...)))..))............)))))))))))...)))))).....

Structure

cagaguuuc      UUC           acuuccacuuuc  uu   --u   ucu 
         UUGGCA   UGUCCACCUCC            ag  cca   gga   c
         ||||||   |||||||||||            ||  |||   |||    
         AACCGU   ACAGGUGGAgg            uc  ggu   ucu   u
----gaGAU      CAU           cucaugcaucua  cc   uuu   cuc 

Annotation confidence High

Genome context

chr4: 1556919-1557028 [-]

Mature gma-miR394c-5p

• Accession: MIMAT0020996
• Description: Glycine max gma-miR394c-5p mature miRNA
• Sequence: 10 - UUGGCAUUCUGUCCACCUCC - 29
• Evidence: experimental ; 454 [1]

Mature gma-miR394c-3p

• Accession: MIMAT0054190
• Description: Glycine max gma-miR394c-3p mature miRNA
• Sequence: 88 - AGGUGGACAUACUGCCAAUAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506