Stem-loop gma-MIR408d

Accession

MI0017848

Description

Glycine max gma-MIR408d precursor miRNA

Literature search

16 open access papers mention gma-MIR408d
(51 sentences)

Sequence

11051342 reads, 15130.0 reads per million, 178 experiments

aaggCUGGGAACAGGCAGAGCACGAauggagcuaucaacagaaaauggagaagugagaaaugagaggagagaaagagagagaucuguuagggcuacgcucAUGCACUGCCUCUUCCCUGGCUcugucucu
..(((((((((.((((((.(((.((.((.((((...((((((........................................))))))..)))).)).)).))).)))))).))))).))))........

Structure

------aa    -     C      A   C  a  g    auc      aaauggagaagugagaaau 
        ggCU GGGAA AGGCAG GCA GA ug agcu   aacaga                   g
        |||| ||||| |||||| ||| || || ||||   ||||||                    
        UCGG CCCUU UCCGUC CGU cu gc ucgg   uugucu                   a
ucucuguc    U     C      A   A  c  a    -ga      agagagagaaagagaggag 

Annotation confidence High

Genome context

chr19: 47281670-47281799 [-]

Mature gma-miR408d-5p

• Accession: MIMAT0054192
• Description: Glycine max gma-miR408d-5p mature miRNA
• Sequence: 5 - CUGGGAACAGGCAGAGCACGA - 25
• Evidence: experimental ; unknown

Mature gma-miR408d-3p

• Accession: MIMAT0020998
• Description: Glycine max gma-miR408d-3p mature miRNA
• Sequence: 101 - AUGCACUGCCUCUUCCCUGGCU - 122
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553