Stem-loop hsa-mir-5000

Accession

MI0017866

Symbol

HGNC: MIR5000

Description

Homo sapiens hsa-mir-5000 precursor miRNA

Sequence

158 reads, 1087 reads per million, 32 experiments

cugaagaguagagugugugguccCAGUUCAGAAGUGUUCCUGAGUaacuugugcuuauaacUCAGGACACUUCUGAACUUGGAccauacaggucucccugcuu
.....((((((((((((((((((.(((((((((((((.(((((((..............)))))))))))))))))))).))))))))))...)))..)))))

Structure

cugaa     --   ---          C             U       aacuug 
     gagua  gag   uguguggucc AGUUCAGAAGUGU CCUGAGU      u
     |||||  |||   |||||||||| ||||||||||||| |||||||       
     uucgu  cuc   acauaccAGG UCAAGUCUUCACA GGACUca      g
-----     cc   ugg          U             -       auauuc 

Annotation confidence High

Genome context

chr2: 75090812-75090914 [+]

Disease association

hsa-mir-5000 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-5000-5p

• Accession: MIMAT0021019
• Description: Homo sapiens hsa-miR-5000-5p mature miRNA
• Sequence: 24 - CAGUUCAGAAGUGUUCCUGAGU - 45
• Evidence: experimental ; Illumina [2]

Mature hsa-miR-5000-3p

• Accession: MIMAT0021020
• Description: Homo sapiens hsa-miR-5000-3p mature miRNA
• Sequence: 62 - UCAGGACACUUCUGAACUUGGA - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21606961
   Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia
   "Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML"
   "Leukemia (2011) 25:1389-1399


2. PubMed ID: 21558790
   Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
   "Hansen TB, Kjems J, Bramsen JB"
   "RNA Biol (2011) 8:378-383