Stem-loop ath-MIR5013

Accession

MI0017881

Description

Arabidopsis thaliana ath-MIR5013 precursor miRNA

Sequence

1474 reads, 12.0 reads per million, 87 experiments

ggaucuguucauaacgaaguuguugggcgauacaucauuuaguagacaaggUUUGUGACAUCUAGGUGCUUUuuuuuuucuucuauaaacAAGAGCACCUAGAUAUCAUAAACcuugucuacuaaaugacaucuaggugcuuguugugcuuacaguucu
(((.((((.((((((.((((..(((((.(.....((((((((((((((((((((((((.((((((((((((((.(((.........))).)))))))))))))).))))))))))))))))))))))))).)))))..))))))))))...)))).)))

Structure

   u    --u      g    ug     c auaca                        C              u   uuc 
gga cugu   cauaac aagu  uuggg g     ucauuuaguagacaaggUUUGUGA AUCUAGGUGCUUUu uuu   u
||| ||||   |||||| ||||  ||||| |     |||||||||||||||||||||||| |||||||||||||| |||   u
ucu gaca   guguug uucg  gaucu c     aguaaaucaucuguucCAAAUACU UAGAUCCACGAGAA aaa   c
   u    uuc      -    ug     a -----                        A              c   uau 

Annotation confidence High

Genome context

chr2: 7166817-7166975 [+]

Mature ath-miR5013-5p

• Accession: MIMAT0020517
• Description: Arabidopsis thaliana ath-miR5013-5p mature miRNA
• Sequence: 52 - UUUGUGACAUCUAGGUGCUUU - 72
• Evidence: experimental ; Illumina [1]

Mature ath-miR5013-3p

• Accession: MIMAT0053904
• Description: Arabidopsis thaliana ath-miR5013-3p mature miRNA
• Sequence: 91 - AAGAGCACCUAGAUAUCAUAAAC - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620