Stem-loop ath-MIR5015

Accession

MI0017883

Description

Arabidopsis thaliana ath-MIR5015 precursor miRNA

Literature search

1 open access papers mention ath-MIR5015
(1 sentences)

Sequence

2063 reads, 14.0 reads per million, 149 experiments

uuguuguuguuguuguuauuauguuuugcuuucguuaauguCAUGUGUUCUGUUGUUGUUGGuguuauguguagucuuccaugugaaauaucACAUAGAAGACUAAACAUAACAUCaacaacaccaaaacacauggcauuaacgaaagcaaauggaagacaauggaauuuuag
.........((((((((.((....(((((((((((((((((((((((((.((.(((((((((((((((((.((((((((.((((((....)))))).)))))))).))))))))))))))))).)).)))))))))))))))))))))))))..)).))))))))........

Structure

uuguuguug        a  augu                         C  U                 g        c      a 
         uuguuguu uu    uuugcuuucguuaauguCAUGUGUU UG UGUUGUUGGuguuaugu uagucuuc auguga a
         |||||||| ||    ||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||  
         gguaacag ag    aaacgaaagcaauuacgguacacaa ac acaacaaCUACAAUACA AUCAGAAG UACAcu u
-gauuuuaa        a  --gu                         a  c                 A        A      a 

Annotation confidence Low

Genome context

chr5: 20554881-20555053 [-]

Mature ath-miR5015-5p

• Accession: MIMAT0020519
• Description: Arabidopsis thaliana ath-miR5015-5p mature miRNA
• Sequence: 42 - CAUGUGUUCUGUUGUUGUUGG - 62
• Evidence: experimental ; Illumina [1]

Mature ath-miR5015-3p

• Accession: MIMAT0053905
• Description: Arabidopsis thaliana ath-miR5015-3p mature miRNA
• Sequence: 93 - ACAUAGAAGACUAAACAUAACAUC - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620