miRBase entry: ath-MIR5017

Stem-loop ath-MIR5017


Accession
MI0017885
Description
Arabidopsis thaliana ath-MIR5017 precursor miRNA


Sequence

gguuugcuuaacacggccuuaaaacuaauauaguacuuuuuaucuucuugaaaAUUUGUUACUAAUUUGGAAUGaauuagcuaaauggcuaagcuaauUUAUACCAAAUUAAUAGCAAAguuugaagaacaugaacaauguacaauacuaguguuaaagccuaugcaaagcaugagcc
(((((((((..((.(((.((((.((((.(((.((((..(((((.(((((.(((.(((((((.((((((((.(((((((((((.........))))))))))).)))))))).))))))).))).))))).)))))....)))).))).)))).)))).)))..))..)))))..))))

Structure
    --     aa  -c   c    a    a   a    --uu     c     g   A       C        A           aaa 
gguu  ugcuu  ca  ggc uuaa acua uau guac    uuuau uucuu aaa UUUGUUA UAAUUUGG AUGaauuagcu   u
||||  |||||  ||  ||| |||| |||| ||| ||||    ||||| ||||| ||| ||||||| |||||||| |||||||||||   g
ccga  acgaa  gu  ccg aauu ugau aua caug    aagua aagaa uuu AAACGAU AUUAAACC UAUUuaaucga   g
    gu     ac  au   a    g    c   a    uaac     c     g   g       A        A           auc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 11962901-11963078 [-]

Database links

Mature ath-miR5017-3p

Accession MIMAT0020521
Description Arabidopsis thaliana ath-miR5017-3p mature miRNA
Sequence 99 - UUAUACCAAAUUAAUAGCAAA - 119
Evidence experimental
Illumina [1]

Mature ath-miR5017-5p

Accession MIMAT0032120
Description Arabidopsis thaliana ath-miR5017-5p mature miRNA
Sequence 54 - AUUUGUUACUAAUUUGGAAUG - 74
Evidence not_experimental

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620