miRBase entry: ath-MIR5018

Stem-loop ath-MIR5018


Accession
MI0017886
Description
Arabidopsis thaliana ath-MIR5018 precursor miRNA


Sequence

2391 reads, 18.0 reads per million, 104 experiments
uaugacaacuuccaccaauugguaugucccUUAAAGCUCCACCAUGAGUCCAAUaucuacgacaguucuuguagaaguagugcgguugagucucacuguacuaguuguaauaaaaaaaaacuuuuugaugucaagaugugauucugauaacacuaaguuuuguuauuauaacaccuacaauaagacucaaccucgcuacUUCUGCUAGAAUUGUCAUAGAUAuuagacucguaguggaguuuuaagaaaaguaccaauugauggaaguugucgua
((((((((((((((.((((((((((....(((((((((((((.(((((((.((((((((.(((((((((.((((((((((((.((((((((((...((((...((((((((((...(((((((..((.(((((.((......))))))).))..))))))).))))))))))...))))...)))))))))).)))))))))))).))))))))).)))))))).))))))).)))))))))))))....)))))))))).))))))))))))))

Structure
              c          gucc             C       C        c         u            c          cac    cua          aaa       uu  a     a  ug 
uaugacaacuucca caauugguau    cUUAAAGCUCCAC AUGAGUC AAUaucua gacaguucu guagaaguagug gguugagucu   ugua   guuguaauaa   aaaacuu  ug uguca ga  u
|||||||||||||| ||||||||||    ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||| ||||||||||   ||||   ||||||||||   |||||||  || ||||| ||   
augcuguugaaggu guuaaccaug    gaauuuugaggug ugcucag uuAUAGAU CUGUUAAGA CGUCUUcaucgc ccaacucaga   acau   caauauuauu   uuuugaa  ac auagu cu  g
              a          aaaa             a       a        A         U            u          aua    cca          --g       uc  a     -  ua 


Annotation confidence Medium
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Genome context
chr1: 24543740-24544014 [-]

Database links

Mature ath-miR5018-5p

Accession MIMAT0020522
Description Arabidopsis thaliana ath-miR5018-5p mature miRNA
Sequence 31 - UUAAAGCUCCACCAUGAGUCCAAU - 54
Evidence experimental
Illumina [1]

Mature ath-miR5018-3p

Accession MIMAT0053907
Description Arabidopsis thaliana ath-miR5018-3p mature miRNA
Sequence 200 - UUCUGCUAGAAUUGUCAUAGAUA - 222
Evidence experimental
unknown

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620