miRBase entry: ath-MIR5019

Stem-loop ath-MIR5019


Accession
MI0017887
Description
Arabidopsis thaliana ath-MIR5019 precursor miRNA


Sequence

1308 reads, 11.0 reads per million, 108 experiments
uucugauguaacagcgaCAGUUUGUCUUUUCCAACAACugauagaaccacguuuuccucuuucguuuaagaguuuuaaucgugaagauauugcagcucuaucaguUGUUGGGAAAGAAAAACUCUUaguuuuacaucagga
(((((((((((.(((...(((((.(((((((((((((((((((((.(((((.((..(((((......)))))....)).))))...........).))))))))))))))))))))).)))))....))))))))))))))

Structure
           c   -gaC     G                     a -----------    u  --uc     uc 
uucugauguaa agc    AGUUU UCUUUUCCAACAACugauaga c           cacg uu    cucuu  g
||||||||||| |||    ||||| ||||||||||||||||||||| |           |||| ||    |||||   
aggacuacauu uug    UCAAA AGAAAGGGUUGUugacuaucu g           gugc aa    gagaa  u
           -   aUUC     A                     c acguuauagaa    u  uuuu     uu 


Annotation confidence High
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Genome context
chr2: 10403230-10403370 [+]

Database links

Mature ath-miR5019-5p

Accession MIMAT0053908
Description Arabidopsis thaliana ath-miR5019-5p mature miRNA
Sequence 18 - CAGUUUGUCUUUUCCAACAAC - 38
Evidence experimental
unknown

Mature ath-miR5019-3p

Accession MIMAT0020523
Description Arabidopsis thaliana ath-miR5019-3p mature miRNA
Sequence 106 - UGUUGGGAAAGAAAAACUCUU - 126
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620