Stem-loop ath-MIR5021

Accession

MI0017889

Description

Arabidopsis thaliana ath-MIR5021 precursor miRNA

Literature search

12 open access papers mention ath-MIR5021
(28 sentences)

Sequence

8902 reads, 67.0 reads per million, 138 experiments

guagugaugaugaauuugagauuugggagagggagaggauUGAGAAGAAGAAGAAGAAAAgagugauuugagaguucaugggucuugaaagauuuuagugacuuucguuaucuuccuUGUUGUUGUUCUUCUUCUcuaauaaguucuucaauggaguuuugucgucucuau
((((.((((((......(((((((.(..((((((....((((((((((((((.((.(((((...(((.(((((((.(((((((((....))))))..))))))))))..)))...))).)).)).))))))))))).)))...))))))..).))))))))))))).))))

Structure

    u      gaauuu       g ga      gagg   -           G  G  -   agu   -u       u   --      u 
guag gaugau      gagauuu g  gaggga    auU GAGAAGAAGAA AA AA AAg   gau  ugagagu cau  gggucu g
|||| ||||||      ||||||| |  ||||||    ||| ||||||||||| || || |||   |||  ||||||| |||  ||||||  
uauc cugcug      uuuugag u  cuucuu    uaa cUCUUCUUCUU UU UU Uuc   cua  gcuuuca gug  uuuaga a
    u      ------       g aa      -gaa   u           G  G  G   cuu   uu       -   au      a 

Annotation confidence Medium

Genome context

chr2: 11974711-11974881 [-]

Mature ath-miR5021-5p

• Accession: MIMAT0020525
• Description: Arabidopsis thaliana ath-miR5021-5p mature miRNA
• Sequence: 41 - UGAGAAGAAGAAGAAGAAAA - 60
• Evidence: experimental ; Illumina [1]

Mature ath-miR5021-3p

• Accession: MIMAT0053910
• Description: Arabidopsis thaliana ath-miR5021-3p mature miRNA
• Sequence: 118 - UGUUGUUGUUCUUCUUCU - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620