Stem-loop ath-MIR5020b

Accession

MI0017893

Description

Arabidopsis thaliana ath-MIR5020b precursor miRNA MIR5020

Gene
family

RF04059; MIR5020

Sequence

15725 reads, 66.0 reads per million, 169 experiments

ugagagauaauuaugagugauggucAUGGCAUGAAAGAAGGUGAGAauugcaucgugaaucaaaaccuccacaaguuggauaucuugauuuucugaucaacgcaaUUCUUACUUUCUUUCUUGCUCCUAucaucacugaguauuuuaauca
...((...(((..(.(((((((((...((((.(((((((((((((((((((((((.(((((((....((((.....))))....)))))))..))))....))))))))))))))))))).))))...))))))))).)..)))....)).

Structure

uga  -gau   ua g         cAU    U                   ----    -u       aacc    c 
   ga    aau  u agugauggu   GGCA GAAAGAAGGUGAGAauugc    aucg  gaaucaa    ucca a
   ||    |||  | |||||||||   |||| |||||||||||||||||||    ||||  |||||||    |||| a
   cu    uua  a ucacuacuA   UCGU CUUUCUUUCAUUCUUaacg    uagu  uuuaguu    aggu g
--a  aauu   ug g         UCC    U                   caac    cu       cuau    u 

Annotation confidence High

Genome context

chr4: 6787003-6787153 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5020b

Mature ath-miR5020b-5p

• Accession: MIMAT0020529
• Description: Arabidopsis thaliana ath-miR5020b-5p mature miRNA
• Sequence: 26 - AUGGCAUGAAAGAAGGUGAGA - 46
• Evidence: experimental ; Illumina [1]

Mature ath-miR5020b-3p

• Accession: MIMAT0053913
• Description: Arabidopsis thaliana ath-miR5020b-3p mature miRNA
• Sequence: 106 - UUCUUACUUUCUUUCUUGCUCCUA - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620