Stem-loop ath-MIR5025

Accession

MI0017895

Description

Arabidopsis thaliana ath-MIR5025 precursor miRNA

Sequence

ggcucguuagaaaaagcuacuuACUGUAUAUAUGUAAGUGACAuaaucuuuaaaaaauauguagaggaagaaggaugcuaucuccaaagauuaugucacuuacauauauacaguaaguaacuuugcauccagaacguuauauuaacaacuuuguc
....((((.((.((((.((((((((((((((((((((((((((((((((((..............(((.((((....)).))))))))))))))))))))))))))))))))))))))).))))...))...))))...................

Structure

---------------ggcu    --a  --a    c                                  aaaaaauauguaga   a  -  g 
                   cguu   ga   aaag uacuuACUGUAUAUAUGUAAGUGACAuaaucuuu              gga ga ag a
                   ||||   ||   |||| ||||||||||||||||||||||||||||||||||              ||| || ||  
                   gcaa   cu   uuuc augaaugacauauauacauucacuguauuagaaa              ccu cu uc u
cuguuucaacaauuauauu    gac  acg    a                                  --------------   -  a  g 

Annotation confidence Not enough data

Genome context

chr1: 16993891-16994045 [+]

Mature ath-miR5025

• Accession: MIMAT0020531
• Description: Arabidopsis thaliana ath-miR5025 mature miRNA
• Sequence: 23 - ACUGUAUAUAUGUAAGUGACA - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620