Stem-loop ath-MIR5028

Accession

MI0017898

Description

Arabidopsis thaliana ath-MIR5028 precursor miRNA

Literature search

1 open access papers mention ath-MIR5028
(1 sentences)

Sequence

18756 reads, 98.0 reads per million, 149 experiments

cgucguugccguaacucguucgccugaggauaaugaucAAUUGGGUUUAUGCUAGAGUUaaaucgggucuugaaaagagaaggaaguugcaugcgacuccuuuaucuccucagcacccuaucCAACUCUAACUUCAACCCAAUCGAucauuuuucuacagagcuagaguuuuauugagaug
((((........(((((....(((((((((.(((((((.((((((((...(.(((((((..((.((((.((((..(((((((((.((((....)))))))))).)))..)))).)))).))..))))))).)...)))))))).))))))).)))).))).))..))))).......))))

Structure

    guugccgu     guuc  -   -    u       A        UAU C       aa  c    c    aa   -      a    c 
cguc        aacuc    gc cug agga aaugauc AUUGGGUU   G UAGAGUU  au gggu uuga  aga gaagga guug a
||||        |||||    || ||| |||| ||||||| ||||||||   | |||||||  || |||| ||||  ||| |||||| ||||  
guag        uugag    cg gac ucuu uuacuAG UAACCCAA   C AUCUCAA  ua ccca gacu  ucu uuuccu cagc u
    -aguuauu     --au  a   a    u       C        CUU A       Cc  u    c    cc   a      -    g 

Annotation confidence High

Genome context

chr4: 6546647-6546827 [-]

Mature ath-miR5028-5p

• Accession: MIMAT0020534
• Description: Arabidopsis thaliana ath-miR5028-5p mature miRNA
• Sequence: 39 - AAUUGGGUUUAUGCUAGAGUU - 59
• Evidence: experimental ; Illumina [1]

Mature ath-miR5028-3p

• Accession: MIMAT0053917
• Description: Arabidopsis thaliana ath-miR5028-3p mature miRNA
• Sequence: 123 - CAACUCUAACUUCAACCCAAUCGA - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620