Stem-loop ath-MIR5029

Accession

MI0017899

Description

Arabidopsis thaliana ath-MIR5029 precursor miRNA

Literature search

1 open access papers mention ath-MIR5029
(2 sentences)

Sequence

7020 reads, 46.0 reads per million, 159 experiments

gaaugagaaugaugaugcaucuuauguaacgaucgggAAUGAGAGAGAACACUGCAAAuuagagauccaaauucaauggauggagaguaaucgauucagcuuggaucguaauugguaagagcauugauaagggguuaauuugcaguguucucucucAUUCCCGAUCGUUUGUGCGUUAUcaugauuuauuu
(((((((.((((((((((((.......((((((((((((((((((((((((((((((((((...((((....(((((((((.((......)).)))).((((..((((....))))..)))))))))....)))))))))))))))))))))))))))))))))))))).))))))))))))..)))))))

Structure

       -a            cuuaugu                                  gag    aaau     ggauggagaguaaucgauuca    gg    u 
gaaugag  augaugaugcau       aacgaucgggAAUGAGAGAGAACACUGCAAAuua   aucc    ucaau                     gcuu  aucg a
|||||||  ||||||||||||       ||||||||||||||||||||||||||||||||||   ||||    |||||                     ||||  ||||  
uuuauuu  uacUAUUGCGUG       UUGCUAGCCCUUAcucucucuugugacguuuaau   uggg    aguua                     cgag  uggu a
       ag            ------U                                  ---    gaau     ---------------------    aa    u 

Annotation confidence Low

Genome context

chr5: 12268507-12268697 [+]

Mature ath-miR5029-5p

• Accession: MIMAT0020535
• Description: Arabidopsis thaliana ath-miR5029-5p mature miRNA
• Sequence: 38 - AAUGAGAGAGAACACUGCAAA - 58
• Evidence: experimental ; Illumina [1]

Mature ath-miR5029-3p

• Accession: MIMAT0053918
• Description: Arabidopsis thaliana ath-miR5029-3p mature miRNA
• Sequence: 157 - AUUCCCGAUCGUUUGUGCGUUAU - 179
• Evidence: experimental ; unknown

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620